IL_6ERI_130

3D structure

PDB id

6ERI (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of the chloroplast ribosome with chl-RRF and hibernation-promoting factor

Experimental method

ELECTRON MICROSCOPY

Resolution

3 Å

Loop

Sequence

CGGCUAAC*GG

Length

10 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_6ERI_130 not in the Motif Atlas

Homologous match to IL_4LFB_020

Geometric discrepancy: 0.113

The information below is about IL_4LFB_020

Detailed Annotation

SSU/LSU pseudoknot

Broad Annotation

No text annotation

Motif group

IL_11411.1

Basepair signature

cWW-L-cWW-L-L-R-cSH

Number of instances in this motif group

12

Unit IDs

6ERI|1|BA|C|453
6ERI|1|BA|G|454
6ERI|1|BA|G|455
6ERI|1|BA|C|456
6ERI|1|BA|U|457
6ERI|1|BA|A|458
6ERI|1|BA|A|459
6ERI|1|BA|C|460
*
6ERI|1|BA|G|489
6ERI|1|BA|G|490

Current chains

Chain BA

16S ribosomal RNA

Nearby chains

Chain BD

30S ribosomal protein S4, chloroplastic

Chain BL

30S ribosomal protein S12, chloroplastic