IL_6ERI_134

3D structure

PDB id

6ERI (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of the chloroplast ribosome with chl-RRF and hibernation-promoting factor

Experimental method

ELECTRON MICROSCOPY

Resolution

3 Å

Loop

Sequence

UUUU*ACCA

Length

8 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_6ERI_134 not in the Motif Atlas

Geometric match to IL_5TBW_128

Geometric discrepancy: 0.1719

The information below is about IL_5TBW_128

Detailed Annotation

Tandem non-canonical cWW pairs

Broad Annotation

No text annotation

Motif group

IL_67085.2

Basepair signature

cWW-cWW-cWW-cWW

Number of instances in this motif group

55

Unit IDs

6ERI|1|BA|U|540
6ERI|1|BA|U|541
6ERI|1|BA|U|542
6ERI|1|BA|U|543
*
6ERI|1|BA|A|594
6ERI|1|BA|C|595
6ERI|1|BA|C|596
6ERI|1|BA|A|597

Current chains

Chain BA

16S ribosomal RNA

Nearby chains

Chain BH

30S ribosomal protein S8, chloroplastic

Chain BO

30S ribosomal protein S15, chloroplastic

Chain BQ

30S ribosomal protein S17, chloroplastic