IL_6ERI_136

3D structure

PDB id

6ERI (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of the chloroplast ribosome with chl-RRF and hibernation-promoting factor

Experimental method

ELECTRON MICROSCOPY

Resolution

3 Å

Loop

Sequence

GUC*GAAAC

Length

8 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_6ERI_136 not in the Motif Atlas

Homologous match to IL_6CZR_361

Geometric discrepancy: 0.1853

The information below is about IL_6CZR_361

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

IL_56539.1

Basepair signature

cWW-cWW-cSH-cWW-L

Number of instances in this motif group

4

Unit IDs

6ERI|1|BA|G|546
6ERI|1|BA|U|547
6ERI|1|BA|C|548
*
6ERI|1|BA|G|588
6ERI|1|BA|A|589
6ERI|1|BA|A|590
6ERI|1|BA|A|591
6ERI|1|BA|C|592

Current chains

Chain BA

16S ribosomal RNA

Nearby chains

Chain BH

30S ribosomal protein S8, chloroplastic

Chain BQ

30S ribosomal protein S17, chloroplastic