IL_6ERI_161

3D structure

PDB id

6ERI (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of the chloroplast ribosome with chl-RRF and hibernation-promoting factor

Experimental method

ELECTRON MICROSCOPY

Resolution

3 Å

Loop

Sequence

GUCG*CUAACC

Length

10 nucleotides

Bulged bases

6ERI|1|BA|C|1206, 6ERI|1|BA|A|1229, 6ERI|1|BA|C|1230

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_6ERI_161 not in the Motif Atlas

Homologous match to IL_4LFB_052

Geometric discrepancy: 0.1896

The information below is about IL_4LFB_052

Detailed Annotation

180 degree turn

Broad Annotation

No text annotation

Motif group

IL_08849.1

Basepair signature

cWW-L-cWW

Number of instances in this motif group

2

Unit IDs

6ERI|1|BA|G|1204
6ERI|1|BA|U|1205
6ERI|1|BA|C|1206
6ERI|1|BA|G|1207
*
6ERI|1|BA|C|1226
6ERI|1|BA|U|1227
6ERI|1|BA|A|1228
6ERI|1|BA|A|1229
6ERI|1|BA|C|1230
6ERI|1|BA|C|1231

Current chains

Chain BA

16S ribosomal RNA

Nearby chains

Chain BC

30S ribosomal protein S3, chloroplastic

Chain BJ

30S ribosomal protein S10 alpha, chloroplastic

Chain BN

30S ribosomal protein S14, chloroplastic