IL_6ERI_165

3D structure

PDB id

6ERI (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of the chloroplast ribosome with chl-RRF and hibernation-promoting factor

Experimental method

ELECTRON MICROSCOPY

Resolution

3 Å

Loop

Sequence

GCCC*GUAAC

Length

9 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_6ERI_165 not in the Motif Atlas

Geometric match to IL_4V88_464

Geometric discrepancy: 0.1315

The information below is about IL_4V88_464

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

IL_65718.1

Basepair signature

cWW-cSH-cWS-cWW-cWW

Number of instances in this motif group

5

Unit IDs

6ERI|1|BA|G|1351
6ERI|1|BA|C|1352
6ERI|1|BA|C|1353
6ERI|1|BA|C|1354
*
6ERI|1|BA|G|1447
6ERI|1|BA|U|1448
6ERI|1|BA|A|1449
6ERI|1|BA|A|1450
6ERI|1|BA|C|1451

Current chains

Chain BA

16S ribosomal RNA

Nearby chains

Chain AA

Large subunit ribosomal RNA; LSU rRNA

Chain BV

Ribosome-binding factor PSRP1, chloroplastic