IL_6EZ0_011

3D structure

PDB id

6EZ0 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Specific phosphorothioate substitution within domain 6 of a group II intron ribozyme leads to changes in local structure and metal ion binding

Experimental method

SOLUTION NMR

Resolution

Loop

Sequence

GAG*C(U37)C

Length

6 nucleotides

Bulged bases

None detected

QA status

Self-complementary:

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_6EZ0_011 not in the Motif Atlas

Geometric match to IL_4E59_001

Geometric discrepancy: 0.1595

The information below is about IL_4E59_001

Detailed Annotation

Isolated non-canonical cWW pair

Broad Annotation

Isolated non-canonical cWW pair

Motif group

IL_01003.5

Basepair signature

cWW-cWW-cWW

Number of instances in this motif group

238

Unit IDs

6EZ0|6|A|G|2
6EZ0|6|A|A|3
6EZ0|6|A|G|4
*
6EZ0|6|A|C|24
6EZ0|6|A|U37|25
6EZ0|6|A|C|26

Current chains

Chain A

RNA (27-MER)

Nearby chains