IL_6FAI_031

3D structure

PDB id

6FAI (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of a eukaryotic cytoplasmic pre-40S ribosomal subunit

Experimental method

ELECTRON MICROSCOPY

Resolution

3.4 Å

Loop

Sequence

GUUAAAA*UC

Length

9 nucleotides

Bulged bases

6FAI|1|2|A|619

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_6FAI_031 not in the Motif Atlas

Homologous match to IL_4V88_416

Geometric discrepancy: 0.0941

The information below is about IL_4V88_416

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

IL_38186.3

Basepair signature

cWW-L-cWW-R-L-R

Number of instances in this motif group

5

Unit IDs

6FAI|1|2|G|616
6FAI|1|2|U|617
6FAI|1|2|U|618
6FAI|1|2|A|619
6FAI|1|2|A|620
6FAI|1|2|A|621
6FAI|1|2|A|622
*
6FAI|1|2|U|1104
6FAI|1|2|C|1105

Current chains

Chain 2

20S ribosomal RNA

Nearby chains

Chain X

40S ribosomal protein S23-A