IL_6FAI_079

3D structure

PDB id

6FAI (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of a eukaryotic cytoplasmic pre-40S ribosomal subunit

Experimental method

ELECTRON MICROSCOPY

Resolution

3.4 Å

Loop

Sequence

CGCU*AAAAG

Length

9 nucleotides

Bulged bases

6FAI|1|2|A|1754

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_6FAI_079 not in the Motif Atlas

Geometric match to IL_2IL9_001

Geometric discrepancy: 0.3671

The information below is about IL_2IL9_001

Detailed Annotation

Tandem non-canonical cWW pairs

Broad Annotation

No text annotation

Motif group

IL_42334.1

Basepair signature

cWW-L-R-L-R-cWW

Number of instances in this motif group

3

Unit IDs

6FAI|1|2|C|1644
6FAI|1|2|G|1645
6FAI|1|2|C|1646
6FAI|1|2|U|1647
*
6FAI|1|2|A|1753
6FAI|1|2|A|1754
6FAI|1|2|A|1755
6FAI|1|2|A|1756
6FAI|1|2|G|1757

Current chains

Chain 2

20S ribosomal RNA

Nearby chains

Chain X

40S ribosomal protein S23-A

Chain k

Ribosome biogenesis protein TSR1

Chain l

Serine/threonine-protein kinase RIO2