IL_6FEC_008
3D structure
- PDB id
- 6FEC (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Human cap-dependent 48S pre-initiation complex
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 6.3 Å
Loop
- Sequence
- GUUAU*ACGUC
- Length
- 10 nucleotides
- Bulged bases
- None detected
- QA status
- Unknown status
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- IL_6FEC_008 not in the Motif Atlas
- Geometric match to IL_8VMB_003
- Geometric discrepancy: 0.2882
- The information below is about IL_8VMB_003
- Detailed Annotation
- Triple non-canonical cWW pairs
- Broad Annotation
- No text annotation
- Motif group
- IL_49751.4
- Basepair signature
- cWW-cWW-cWW-cWW-cWW
- Number of instances in this motif group
- 16
Unit IDs
6FEC|1|A|G|108
6FEC|1|A|U|109
6FEC|1|A|U|110
6FEC|1|A|A|111
6FEC|1|A|U|112
*
6FEC|1|A|A|339
6FEC|1|A|C|340
6FEC|1|A|G|341
6FEC|1|A|U|342
6FEC|1|A|C|343
Current chains
- Chain A
- 18S ribosomal RNA
Nearby chains
- Chain G
- 40S ribosomal protein S11
- Chain I
- 40S ribosomal protein S4, X isoform
- Chain o
- 40S ribosomal protein S8
Coloring options: