IL_6FEC_011
3D structure
- PDB id
- 6FEC (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Human cap-dependent 48S pre-initiation complex
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 6.3 Å
Loop
- Sequence
- GGAUAAC*GCUAAUAC
- Length
- 15 nucleotides
- Bulged bases
- 6FEC|1|A|U|172
- QA status
- Unknown status
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- IL_6FEC_011 not in the Motif Atlas
- Homologous match to IL_4V88_394
- Geometric discrepancy: 0.1917
- The information below is about IL_4V88_394
- Detailed Annotation
- tWH-tWH-tHW-tHW
- Broad Annotation
- No text annotation
- Motif group
- IL_80604.3
- Basepair signature
- cWW-cWW-tWH-tWH-tHW-L-R-cWW
- Number of instances in this motif group
- 4
Unit IDs
6FEC|1|A|G|145
6FEC|1|A|G|146
6FEC|1|A|A|147
6FEC|1|A|U|148
6FEC|1|A|A|149
6FEC|1|A|A|150
6FEC|1|A|C|151
*
6FEC|1|A|G|167
6FEC|1|A|C|168
6FEC|1|A|U|169
6FEC|1|A|A|170
6FEC|1|A|A|171
6FEC|1|A|U|172
6FEC|1|A|A|173
6FEC|1|A|C|174
Current chains
- Chain A
- 18S ribosomal RNA
Nearby chains
- Chain q
- 40S ribosomal protein S6
- Chain s
- 40S ribosomal protein S24
Coloring options: