IL_6FEC_045
3D structure
- PDB id
- 6FEC (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Human cap-dependent 48S pre-initiation complex
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 6.3 Å
Loop
- Sequence
- GCUAG*CUUGGACC
- Length
- 13 nucleotides
- Bulged bases
- 6FEC|1|A|G|966
- QA status
- Unknown status
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- IL_6FEC_045 not in the Motif Atlas
- Homologous match to IL_4V88_434
- Geometric discrepancy: 0.2943
- The information below is about IL_4V88_434
- Detailed Annotation
- Kink-turn
- Broad Annotation
- No text annotation
- Motif group
- IL_45067.5
- Basepair signature
- cWW-tSH-tSS-tHS-R-cWW-cWW-R
- Number of instances in this motif group
- 16
Unit IDs
6FEC|1|A|G|948
6FEC|1|A|C|949
6FEC|1|A|U|950
6FEC|1|A|A|951
6FEC|1|A|G|952
*
6FEC|1|A|C|963
6FEC|1|A|U|964
6FEC|1|A|U|965
6FEC|1|A|G|966
6FEC|1|A|G|967
6FEC|1|A|A|968
6FEC|1|A|C|969
6FEC|1|A|C|970
Current chains
- Chain A
- 18S ribosomal RNA
Nearby chains
- Chain P
- Eukaryotic translation initiation factor 2 subunit 1
- Chain i
- 40S ribosomal protein S3a
- Chain j
- 40S ribosomal protein S14
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