IL_6FEC_061
3D structure
- PDB id
- 6FEC (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Human cap-dependent 48S pre-initiation complex
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 6.3 Å
Loop
- Sequence
- GUGCAU*AUGC
- Length
- 10 nucleotides
- Bulged bases
- 6FEC|1|A|C|1327
- QA status
- Unknown status
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- IL_6FEC_061 not in the Motif Atlas
- Geometric match to IL_4V88_473
- Geometric discrepancy: 0.2759
- The information below is about IL_4V88_473
- Detailed Annotation
- Tandem non-canonical cWW pairs
- Broad Annotation
- No text annotation
- Motif group
- IL_36174.1
- Basepair signature
- cWW-cWW-cWW-cWW
- Number of instances in this motif group
- 15
Unit IDs
6FEC|1|A|G|1324
6FEC|1|A|U|1325
6FEC|1|A|G|1326
6FEC|1|A|C|1327
6FEC|1|A|A|1328
6FEC|1|A|U|1329
*
6FEC|1|A|A|1494
6FEC|1|A|U|1495
6FEC|1|A|G|1496
6FEC|1|A|C|1497
Current chains
- Chain A
- 18S ribosomal RNA
Nearby chains
- Chain F
- Messenger RNA (26-MER)
- Chain J
- 40S ribosomal protein S29
- Chain g
- 40S ribosomal protein S3
- Chain h
- 40S ribosomal protein S20
- Chain t
- 40S ribosomal protein S10
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