IL_6FEC_063

3D structure

PDB id

6FEC (explore in PDB, NAKB, or RNA 3D Hub)

Description

Human cap-dependent 48S pre-initiation complex

Experimental method

ELECTRON MICROSCOPY

Resolution

6.3 Å

Loop

Sequence

GG*UCUGU

Length

7 nucleotides

Bulged bases

6FEC|1|A|C|1489, 6FEC|1|A|U|1490

QA status

Unknown status

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_6FEC_063 not in the Motif Atlas

Geometric match to IL_4LFB_045

Geometric discrepancy: 0.2504

The information below is about IL_4LFB_045

Detailed Annotation

Minor groove platform

Broad Annotation

No text annotation

Motif group

IL_24264.1

Basepair signature

cWW-L-R-L-R-L-R-cWW

Number of instances in this motif group

6

Unit IDs

6FEC|1|A|G|1330
6FEC|1|A|G|1331
*
6FEC|1|A|U|1488
6FEC|1|A|C|1489
6FEC|1|A|U|1490
6FEC|1|A|G|1491
6FEC|1|A|U|1492

Current chains

Chain A

18S ribosomal RNA

Nearby chains

Chain J

40S ribosomal protein S29

Chain g

40S ribosomal protein S3

Chain h

40S ribosomal protein S20