IL_6FEC_067
3D structure
- PDB id
- 6FEC (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Human cap-dependent 48S pre-initiation complex
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 6.3 Å
Loop
- Sequence
- CAUGC*GAGG
- Length
- 9 nucleotides
- Bulged bases
- 6FEC|1|A|U|1393
- QA status
- Unknown status
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- IL_6FEC_067 not in the Motif Atlas
- Homologous match to IL_8C3A_461
- Geometric discrepancy: 0.5891
- The information below is about IL_8C3A_461
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- IL_13404.1
- Basepair signature
- cWW-tSH-tHW-cSH-tHH-cWH-L-R-cWW-L-L-R
- Number of instances in this motif group
- 10
Unit IDs
6FEC|1|A|C|1391
6FEC|1|A|A|1392
6FEC|1|A|U|1393
6FEC|1|A|G|1394
6FEC|1|A|C|1395
*
6FEC|1|A|G|1443
6FEC|1|A|A|1444
6FEC|1|A|G|1445
6FEC|1|A|G|1446
Current chains
- Chain A
- 18S ribosomal RNA
Nearby chains
- Chain H
- 40S ribosomal protein S16
- Chain e
- 40S ribosomal protein S17
- Chain g
- 40S ribosomal protein S3
- Chain h
- 40S ribosomal protein S20
- Chain m
- Receptor of activated protein C kinase 1
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