IL_6FEC_071

3D structure

PDB id

6FEC (explore in PDB, NAKB, or RNA 3D Hub)

Description

Human cap-dependent 48S pre-initiation complex

Experimental method

ELECTRON MICROSCOPY

Resolution

6.3 Å

Loop

Sequence

CCCC*GG

Length

6 nucleotides

Bulged bases

None detected

QA status

Unknown status

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_6FEC_071 not in the Motif Atlas

Geometric match to IL_5J7L_249

Geometric discrepancy: 0.3552

The information below is about IL_5J7L_249

Detailed Annotation

Single stack bend

Broad Annotation

No text annotation

Motif group

IL_90729.1

Basepair signature

cWW-L-cWW

Number of instances in this motif group

30

Unit IDs

6FEC|1|A|C|1412
6FEC|1|A|C|1413
6FEC|1|A|C|1414
6FEC|1|A|C|1415
*
6FEC|1|A|G|1424
6FEC|1|A|G|1425

Current chains

Chain A

18S ribosomal RNA

Nearby chains

Chain H

40S ribosomal protein S16

Chain R

40S ribosomal protein S19