IL_6FEC_085

3D structure

PDB id

6FEC (explore in PDB, NAKB, or RNA 3D Hub)

Description

Human cap-dependent 48S pre-initiation complex

Experimental method

ELECTRON MICROSCOPY

Resolution

6.3 Å

Loop

Sequence

CCUC*GACG

Length

8 nucleotides

Bulged bases

None detected

QA status

Unknown status

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_6FEC_085 not in the Motif Atlas

Geometric match to IL_5TBW_129

Geometric discrepancy: 0.2824

The information below is about IL_5TBW_129

Detailed Annotation

Tandem non-canonical cWW pairs

Broad Annotation

No text annotation

Motif group

IL_67085.2

Basepair signature

cWW-cWW-cWW-cWW

Number of instances in this motif group

55

Unit IDs

6FEC|1|A|C|1734
6FEC|1|A|C|1735
6FEC|1|A|U|1736
6FEC|1|A|C|1737
*
6FEC|1|A|G|1786
6FEC|1|A|A|1787
6FEC|1|A|C|1788
6FEC|1|A|G|1789

Current chains

Chain A

18S ribosomal RNA

Nearby chains

Chain o

40S ribosomal protein S8

Chain q

40S ribosomal protein S6