IL_6FEC_108
3D structure
- PDB id
- 6FEC (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Human cap-dependent 48S pre-initiation complex
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 6.3 Å
Loop
- Sequence
- UAUCAA*UGACCACG
- Length
- 14 nucleotides
- Bulged bases
- 6FEC|1|A|U|351, 6FEC|1|A|C|389, 6FEC|1|A|C|390
- QA status
- Unknown status
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- IL_6FEC_108 not in the Motif Atlas
- Homologous match to IL_8CRE_408
- Geometric discrepancy: 0.2462
- The information below is about IL_8CRE_408
- Detailed Annotation
- Kink-turn with non-sequential stacking
- Broad Annotation
- Kink-turn
- Motif group
- IL_46174.4
- Basepair signature
- cWW-cSS-tSS-tSH-L-cWW-tHW-cWW
- Number of instances in this motif group
- 6
Unit IDs
6FEC|1|A|U|349
6FEC|1|A|A|350
6FEC|1|A|U|351
6FEC|1|A|C|352
6FEC|1|A|A|353
6FEC|1|A|A|354
*
6FEC|1|A|U|386
6FEC|1|A|G|387
6FEC|1|A|A|388
6FEC|1|A|C|389
6FEC|1|A|C|390
6FEC|1|A|A|391
6FEC|1|A|C|392
6FEC|1|A|G|393
Current chains
- Chain A
- 18S ribosomal RNA
Nearby chains
- Chain G
- 40S ribosomal protein S11
- Chain Q
- 40S ribosomal protein S23
- Chain o
- 40S ribosomal protein S8
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