IL_6FF4_002
3D structure
- PDB id
- 6FF4 (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- human Bact spliceosome core structure
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 3.4 Å
Loop
- Sequence
- AUCU*AUUU
- Length
- 8 nucleotides
- Bulged bases
- None detected
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- IL_6FF4_002 not in the Motif Atlas
- Geometric match to IL_4UYK_003
- Geometric discrepancy: 0.2672
- The information below is about IL_4UYK_003
- Detailed Annotation
- Tandem non-canonical cWW pairs
- Broad Annotation
- No text annotation
- Motif group
- IL_71194.1
- Basepair signature
- cWW-cWW-cWW-cWW
- Number of instances in this motif group
- 29
Unit IDs
6FF4|1|2|A|38
6FF4|1|2|U|39
6FF4|1|2|C|40
6FF4|1|2|U|41
*
6FF4|1|Z|A|386
6FF4|1|Z|U|387
6FF4|1|Z|U|388
6FF4|1|Z|U|389
Current chains
- Chain 2
- U2 snRNA
- Chain Z
- pre mRNA
Nearby chains
- Chain 7
- Splicing factor 3A subunit 2
- Chain 8
- Splicing factor 3B subunit 2
- Chain L
- Cell division cycle 5-like protein
- Chain u
- Splicing factor 3B subunit 1
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