IL_6FKR_310

3D structure

PDB id

6FKR (explore in PDB, NAKB, or RNA 3D Hub)

Description

Crystal structure of the dolphin proline-rich antimicrobial peptide Tur1A bound to the Thermus thermophilus 70S ribosome

Experimental method

X-RAY DIFFRACTION

Resolution

3.2 Å

Loop

Sequence

G(PSU)GCCAG*CGGUAAUAC

Length

16 nucleotides

Bulged bases

6FKR|1|2a|A|532, 6FKR|1|2a|U|534

QA status

Modified nucleotides: PSU

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_6FKR_310 not in the Motif Atlas

Geometric match to IL_4V88_415

Geometric discrepancy: 0.2017

The information below is about IL_4V88_415

Detailed Annotation

Kink-turn related

Broad Annotation

No text annotation

Motif group

IL_54177.1

Basepair signature

cWW-cSW-tWH-L-R-L-R-tHS-cWW

Number of instances in this motif group

5

Unit IDs

6FKR|1|2a|G|515
6FKR|1|2a|PSU|516
6FKR|1|2a|G|517
6FKR|1|2a|C|518
6FKR|1|2a|C|519
6FKR|1|2a|A|520
6FKR|1|2a|G|521
*
6FKR|1|2a|C|528
6FKR|1|2a|G|529
6FKR|1|2a|G|530
6FKR|1|2a|U|531
6FKR|1|2a|A|532
6FKR|1|2a|A|533
6FKR|1|2a|U|534
6FKR|1|2a|A|535
6FKR|1|2a|C|536

Current chains

Chain 2a

16 ribosomal RNA

Nearby chains

Chain 2c

30S ribosomal protein S3

Chain 2d

30S ribosomal protein S4

Chain 2l

30S ribosomal protein S12

Chain 2z

Ribosome-associated inhibitor A