3D structure

PDB id
6FRK (explore in PDB, NAKB, or RNA 3D Hub)
Description
Structure of a prehandover mammalian ribosomal SRP and SRP receptor targeting complex
Experimental method
ELECTRON MICROSCOPY
Resolution
3.7 Å

Loop

Sequence
UAU*AGG
Length
6 nucleotides
Bulged bases
None detected
QA status
Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.
R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
R3DMCS Rfam
IL_6FRK_006 not in the Motif Atlas
Homologous match to IL_1MFQ_003
Geometric discrepancy: 0.3408
The information below is about IL_1MFQ_003
Detailed Annotation
Isolated non-canonical cWW pair
Broad Annotation
No text annotation
Motif group
IL_87907.2
Basepair signature
cWW-cWW-cWW
Number of instances in this motif group
179

Unit IDs

6FRK|1|1|U|132
6FRK|1|1|A|133
6FRK|1|1|U|134
*
6FRK|1|1|A|163
6FRK|1|1|G|164
6FRK|1|1|G|165

Current chains

Chain 1
Canis lupus familiaris RNA, 7SL, cytoplasmic 1 (RN7SL1), SRP RNA

Nearby chains

Chain u
Signal recognition particle subunit SRP68

Coloring options:


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