3D structure

PDB id
6FRK (explore in PDB, NAKB, or RNA 3D Hub)
Description
Structure of a prehandover mammalian ribosomal SRP and SRP receptor targeting complex
Experimental method
ELECTRON MICROSCOPY
Resolution
3.7 Å

Loop

Sequence
CCAGGU*GAGCAG
Length
12 nucleotides
Bulged bases
None detected
QA status
Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.
R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
R3DMCS Rfam
IL_6FRK_010 not in the Motif Atlas
Homologous match to IL_1MFQ_007
Geometric discrepancy: 0.1556
The information below is about IL_1MFQ_007
Detailed Annotation
tSH-tHW-tHS-cWW
Broad Annotation
No text annotation
Motif group
IL_76308.6
Basepair signature
cWW-tSH-tHW-tHS-cWW-cWW
Number of instances in this motif group
5

Unit IDs

6FRK|1|1|C|190
6FRK|1|1|C|191
6FRK|1|1|A|192
6FRK|1|1|G|193
6FRK|1|1|G|194
6FRK|1|1|U|195
*
6FRK|1|1|G|204
6FRK|1|1|A|205
6FRK|1|1|G|206
6FRK|1|1|C|207
6FRK|1|1|A|208
6FRK|1|1|G|209

Current chains

Chain 1
Canis lupus familiaris RNA, 7SL, cytoplasmic 1 (RN7SL1), SRP RNA

Nearby chains

Chain q
Signal recognition particle subunit SRP19
Chain x
Signal recognition particle 54 kDa protein

Coloring options:


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