IL_6FRK_010
3D structure
- PDB id
- 6FRK (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Structure of a prehandover mammalian ribosomal SRP and SRP receptor targeting complex
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 3.7 Å
Loop
- Sequence
- CCAGGU*GAGCAG
- Length
- 12 nucleotides
- Bulged bases
- None detected
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- IL_6FRK_010 not in the Motif Atlas
- Homologous match to IL_1MFQ_007
- Geometric discrepancy: 0.1556
- The information below is about IL_1MFQ_007
- Detailed Annotation
- tSH-tHW-tHS-cWW
- Broad Annotation
- No text annotation
- Motif group
- IL_76308.6
- Basepair signature
- cWW-tSH-tHW-tHS-cWW-cWW
- Number of instances in this motif group
- 5
Unit IDs
6FRK|1|1|C|190
6FRK|1|1|C|191
6FRK|1|1|A|192
6FRK|1|1|G|193
6FRK|1|1|G|194
6FRK|1|1|U|195
*
6FRK|1|1|G|204
6FRK|1|1|A|205
6FRK|1|1|G|206
6FRK|1|1|C|207
6FRK|1|1|A|208
6FRK|1|1|G|209
Current chains
- Chain 1
- Canis lupus familiaris RNA, 7SL, cytoplasmic 1 (RN7SL1), SRP RNA
Nearby chains
- Chain q
- Signal recognition particle subunit SRP19
- Chain x
- Signal recognition particle 54 kDa protein
Coloring options: