IL_6FRK_079

3D structure

PDB id

6FRK (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of a prehandover mammalian ribosomal SRP and SRP receptor targeting complex

Experimental method

ELECTRON MICROSCOPY

Resolution

3.7 Å

Loop

Sequence

GGGCC*GAUCU

Length

10 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_6FRK_079 not in the Motif Atlas

Geometric match to IL_5TBW_121

Geometric discrepancy: 0.3058

The information below is about IL_5TBW_121

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

IL_05145.3

Basepair signature

cWW-cWW-cWW-cWW-cWW

Number of instances in this motif group

13

Unit IDs

6FRK|1|5|G|1759
6FRK|1|5|G|1760
6FRK|1|5|G|1761
6FRK|1|5|C|1762
6FRK|1|5|C|1763
*
6FRK|1|5|G|1769
6FRK|1|5|A|1770
6FRK|1|5|U|1771
6FRK|1|5|C|1772
6FRK|1|5|U|1773

Current chains

Chain 5

28S ribosomal RNA

Nearby chains

Chain I

Ribosomal protein uL16