IL_6FRK_089
3D structure
- PDB id
- 6FRK (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Structure of a prehandover mammalian ribosomal SRP and SRP receptor targeting complex
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 3.7 Å
Loop
- Sequence
- UAUAGACAG*CCGAA
- Length
- 14 nucleotides
- Bulged bases
- 6FRK|1|5|A|1960
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- IL_6FRK_089 not in the Motif Atlas
- Geometric match to IL_4V9F_042
- Geometric discrepancy: 0.2027
- The information below is about IL_4V9F_042
- Detailed Annotation
- Kink-turn
- Broad Annotation
- No text annotation
- Motif group
- IL_99692.2
- Basepair signature
- cWW-tSS-tSH-L-R-R-L-cWW-L-L
- Number of instances in this motif group
- 6
Unit IDs
6FRK|1|5|U|1957
6FRK|1|5|A|1958
6FRK|1|5|U|1959
6FRK|1|5|A|1960
6FRK|1|5|G|1961
6FRK|1|5|A|1962
6FRK|1|5|C|1963
6FRK|1|5|A|1964
6FRK|1|5|G|1965
*
6FRK|1|5|C|2022
6FRK|1|5|C|2023
6FRK|1|5|G|2024
6FRK|1|5|A|2025
6FRK|1|5|A|2026
Current chains
- Chain 5
- 28S ribosomal RNA
Nearby chains
- Chain 6
- 60S acidic ribosomal protein P0
- Chain m
- Ribosomal protein eL40
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