3D structure

PDB id
6FRK (explore in PDB, NAKB, or RNA 3D Hub)
Description
Structure of a prehandover mammalian ribosomal SRP and SRP receptor targeting complex
Experimental method
ELECTRON MICROSCOPY
Resolution
3.7 Å

Loop

Sequence
UAUAGACAG*CCGAA
Length
14 nucleotides
Bulged bases
6FRK|1|5|A|1960
QA status
Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.
R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
R3DMCS Rfam
IL_6FRK_089 not in the Motif Atlas
Geometric match to IL_4V9F_042
Geometric discrepancy: 0.2027
The information below is about IL_4V9F_042
Detailed Annotation
Kink-turn
Broad Annotation
No text annotation
Motif group
IL_99692.2
Basepair signature
cWW-tSS-tSH-L-R-R-L-cWW-L-L
Number of instances in this motif group
6

Unit IDs

6FRK|1|5|U|1957
6FRK|1|5|A|1958
6FRK|1|5|U|1959
6FRK|1|5|A|1960
6FRK|1|5|G|1961
6FRK|1|5|A|1962
6FRK|1|5|C|1963
6FRK|1|5|A|1964
6FRK|1|5|G|1965
*
6FRK|1|5|C|2022
6FRK|1|5|C|2023
6FRK|1|5|G|2024
6FRK|1|5|A|2025
6FRK|1|5|A|2026

Current chains

Chain 5
28S ribosomal RNA

Nearby chains

Chain 6
60S acidic ribosomal protein P0
Chain m
Ribosomal protein eL40

Coloring options:


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