3D structure

PDB id
6FRK (explore in PDB, NAKB, or RNA 3D Hub)
Description
Structure of a prehandover mammalian ribosomal SRP and SRP receptor targeting complex
Experimental method
ELECTRON MICROSCOPY
Resolution
3.7 Å

Loop

Sequence
CUGAG*CGAAAG
Length
11 nucleotides
Bulged bases
6FRK|1|5|A|2512, 6FRK|1|5|A|2513
QA status
Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.
R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
R3DMCS Rfam
IL_6FRK_099 not in the Motif Atlas
Homologous match to IL_8C3A_067
Geometric discrepancy: 0.1195
The information below is about IL_8C3A_067
Detailed Annotation
UAA/GAN
Broad Annotation
No text annotation
Motif group
IL_89002.4
Basepair signature
cWW-tWH-cWW-L-cWW-tHS
Number of instances in this motif group
15

Unit IDs

6FRK|1|5|C|2446
6FRK|1|5|U|2447
6FRK|1|5|G|2448
6FRK|1|5|A|2449
6FRK|1|5|G|2450
*
6FRK|1|5|C|2509
6FRK|1|5|G|2510
6FRK|1|5|A|2511
6FRK|1|5|A|2512
6FRK|1|5|A|2513
6FRK|1|5|G|2514

Current chains

Chain 5
28S ribosomal RNA

Nearby chains

Chain 8
5.8S ribosomal RNA; 5.8S rRNA
Chain A
Ribosomal protein L8
Chain g
Ribosomal protein eL34
Chain j
Ribosomal protein L37
Chain l
Ribosomal protein eL39

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