IL_6FRK_113

3D structure

PDB id

6FRK (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of a prehandover mammalian ribosomal SRP and SRP receptor targeting complex

Experimental method

ELECTRON MICROSCOPY

Resolution

3.7 Å

Loop

Sequence

CGUAAC*GGAUAAG

Length

13 nucleotides

Bulged bases

6FRK|1|5|U|2880

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_6FRK_113 not in the Motif Atlas

Homologous match to IL_8C3A_084

Geometric discrepancy: 0.1019

The information below is about IL_8C3A_084

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

IL_65969.4

Basepair signature

cWW-tSH-L-R-tHH-tHS-cWW

Number of instances in this motif group

7

Unit IDs

6FRK|1|5|C|2867
6FRK|1|5|G|2868
6FRK|1|5|U|2869
6FRK|1|5|A|2870
6FRK|1|5|A|2871
6FRK|1|5|C|2872
*
6FRK|1|5|G|2877
6FRK|1|5|G|2878
6FRK|1|5|A|2879
6FRK|1|5|U|2880
6FRK|1|5|A|2881
6FRK|1|5|A|2882
6FRK|1|5|G|2883

Current chains

Chain 5

28S ribosomal RNA

Nearby chains

Chain n

Ribosomal protein eL41

Chain p

Ribosomal protein eL43