3D structure

PDB id
6FRK (explore in PDB, NAKB, or RNA 3D Hub)
Description
Structure of a prehandover mammalian ribosomal SRP and SRP receptor targeting complex
Experimental method
ELECTRON MICROSCOPY
Resolution
3.7 Å

Loop

Sequence
CGUAAC*GGAUAAG
Length
13 nucleotides
Bulged bases
6FRK|1|5|U|2880
QA status
Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.
R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
R3DMCS Rfam
IL_6FRK_113 not in the Motif Atlas
Homologous match to IL_8C3A_084
Geometric discrepancy: 0.1019
The information below is about IL_8C3A_084
Detailed Annotation
No text annotation
Broad Annotation
No text annotation
Motif group
IL_65969.4
Basepair signature
cWW-tSH-L-R-tHH-tHS-cWW
Number of instances in this motif group
7

Unit IDs

6FRK|1|5|C|2867
6FRK|1|5|G|2868
6FRK|1|5|U|2869
6FRK|1|5|A|2870
6FRK|1|5|A|2871
6FRK|1|5|C|2872
*
6FRK|1|5|G|2877
6FRK|1|5|G|2878
6FRK|1|5|A|2879
6FRK|1|5|U|2880
6FRK|1|5|A|2881
6FRK|1|5|A|2882
6FRK|1|5|G|2883

Current chains

Chain 5
28S ribosomal RNA

Nearby chains

Chain n
Ribosomal protein eL41
Chain p
Ribosomal protein eL43

Coloring options:


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