IL_6FRK_124

3D structure

PDB id

6FRK (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of a prehandover mammalian ribosomal SRP and SRP receptor targeting complex

Experimental method

ELECTRON MICROSCOPY

Resolution

3.7 Å

Loop

Sequence

CCAAAUGCCUCG*CGCG

Length

16 nucleotides

Bulged bases

6FRK|1|5|A|3785, 6FRK|1|5|C|3791, 6FRK|1|5|C|3810

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_6FRK_124 not in the Motif Atlas

Homologous match to IL_5TBW_090

Geometric discrepancy: 0.144

The information below is about IL_5TBW_090

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

IL_66080.1

Basepair signature

cWW-cWW-tSH-L-cWW-L

Number of instances in this motif group

5

Unit IDs

6FRK|1|5|C|3781
6FRK|1|5|C|3782
6FRK|1|5|A|3783
6FRK|1|5|A|3784
6FRK|1|5|A|3785
6FRK|1|5|U|3786
6FRK|1|5|G|3787
6FRK|1|5|C|3788
6FRK|1|5|C|3789
6FRK|1|5|U|3790
6FRK|1|5|C|3791
6FRK|1|5|G|3792
*
6FRK|1|5|C|3808
6FRK|1|5|G|3809
6FRK|1|5|C|3810
6FRK|1|5|G|3811

Current chains

Chain 5

28S ribosomal RNA

Nearby chains

Chain n

Ribosomal protein eL41