3D structure

PDB id
6FRK (explore in PDB, NAKB, or RNA 3D Hub)
Description
Structure of a prehandover mammalian ribosomal SRP and SRP receptor targeting complex
Experimental method
ELECTRON MICROSCOPY
Resolution
3.7 Å

Loop

Sequence
GUGAGGC*GCUC
Length
11 nucleotides
Bulged bases
6FRK|1|5|G|4084, 6FRK|1|5|G|4086, 6FRK|1|5|G|4087, 6FRK|1|5|C|4162, 6FRK|1|5|U|4163
QA status
Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.
R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
R3DMCS Rfam
IL_6FRK_130 not in the Motif Atlas
Homologous match to IL_5TBW_096
Geometric discrepancy: 0.2577
The information below is about IL_5TBW_096
Detailed Annotation
No text annotation
Broad Annotation
No text annotation
Motif group
IL_74114.1
Basepair signature
cWW-cWS-cWW-L-R
Number of instances in this motif group
2

Unit IDs

6FRK|1|5|G|4082
6FRK|1|5|U|4083
6FRK|1|5|G|4084
6FRK|1|5|A|4085
6FRK|1|5|G|4086
6FRK|1|5|G|4087
6FRK|1|5|C|4088
*
6FRK|1|5|G|4161
6FRK|1|5|C|4162
6FRK|1|5|U|4163
6FRK|1|5|C|4164

Current chains

Chain 5
28S ribosomal RNA

Nearby chains

Chain 8
5.8S ribosomal RNA; 5.8S rRNA
Chain A
Ribosomal protein L8
Chain G
Ribosomal protein eL8
Chain X
Ribosomal protein uL23

Coloring options:


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