IL_6FRK_150

3D structure

PDB id

6FRK (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of a prehandover mammalian ribosomal SRP and SRP receptor targeting complex

Experimental method

ELECTRON MICROSCOPY

Resolution

3.7 Å

Loop

Sequence

CCAU*AGGCG

Length

9 nucleotides

Bulged bases

6FRK|1|5|C|4720

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_6FRK_150 not in the Motif Atlas

Homologous match to IL_5TBW_114

Geometric discrepancy: 0.1454

The information below is about IL_5TBW_114

Detailed Annotation

Double sheared

Broad Annotation

Double sheared

Motif group

IL_09705.12

Basepair signature

cWW-tSH-tHS-cWW

Number of instances in this motif group

35

Unit IDs

6FRK|1|5|C|4582
6FRK|1|5|C|4583
6FRK|1|5|A|4584
6FRK|1|5|U|4585
*
6FRK|1|5|A|4717
6FRK|1|5|G|4718
6FRK|1|5|G|4719
6FRK|1|5|C|4720
6FRK|1|5|G|4721

Current chains

Chain 5

28S ribosomal RNA

Nearby chains

Chain B

Ribosomal protein uL3

Chain O

Ribosomal protein uL13