IL_6FRK_154

3D structure

PDB id

6FRK (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of a prehandover mammalian ribosomal SRP and SRP receptor targeting complex

Experimental method

ELECTRON MICROSCOPY

Resolution

3.7 Å

Loop

Sequence

UGUAUG*CGAAG

Length

11 nucleotides

Bulged bases

6FRK|1|5|U|4634, 6FRK|1|5|U|4636

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_6FRK_154 not in the Motif Atlas

Homologous match to IL_5TBW_118

Geometric discrepancy: 0.266

The information below is about IL_5TBW_118

Detailed Annotation

UAA/GAN related

Broad Annotation

UAA/GAN related

Motif group

IL_17136.4

Basepair signature

cWW-R-L-tHS-tHW-cWW

Number of instances in this motif group

18

Unit IDs

6FRK|1|5|U|4632
6FRK|1|5|G|4633
6FRK|1|5|U|4634
6FRK|1|5|A|4635
6FRK|1|5|U|4636
6FRK|1|5|G|4637
*
6FRK|1|5|C|4662
6FRK|1|5|G|4663
6FRK|1|5|A|4664
6FRK|1|5|A|4665
6FRK|1|5|G|4666

Current chains

Chain 5

28S ribosomal RNA

Nearby chains

Chain B

Ribosomal protein uL3

Chain W

Ribosomal protein eL24

Chain d

Ribosomal protein eL31