IL_6FRK_187

3D structure

PDB id

6FRK (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of a prehandover mammalian ribosomal SRP and SRP receptor targeting complex

Experimental method

ELECTRON MICROSCOPY

Resolution

3.7 Å

Loop

Sequence

GGAAGUCGG*CUGUC

Length

14 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_6FRK_187 not in the Motif Atlas

Homologous match to IL_8P9A_305

Geometric discrepancy: 0.1609

The information below is about IL_8P9A_305

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

IL_22854.4

Basepair signature

cWW-tSH-cWW-tHW-R-L-cWW-L-L-R

Number of instances in this motif group

7

Unit IDs

6FRK|1|5|G|2847
6FRK|1|5|G|2848
6FRK|1|5|A|2849
6FRK|1|5|A|2850
6FRK|1|5|G|2851
6FRK|1|5|U|2852
6FRK|1|5|C|2853
6FRK|1|5|G|2854
6FRK|1|5|G|2855
*
6FRK|1|5|C|3837
6FRK|1|5|U|3838
6FRK|1|5|G|3839
6FRK|1|5|U|3840
6FRK|1|5|C|3841

Current chains

Chain 5

28S ribosomal RNA

Nearby chains

Chain B

Ribosomal protein uL3

Chain V

Ribosomal protein L23