IL_6FT6_056

3D structure

PDB id

6FT6 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of the Nop53 pre-60S particle bound to the exosome nuclear cofactors

Experimental method

ELECTRON MICROSCOPY

Resolution

3.9 Å

Loop

Sequence

GGA*UUUUC

Length

8 nucleotides

Bulged bases

6FT6|1|1|U|1820, 6FT6|1|1|U|1821

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_6FT6_056 not in the Motif Atlas

Homologous match to IL_8C3A_071

Geometric discrepancy: 0.2207

The information below is about IL_8C3A_071

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

IL_43275.2

Basepair signature

cWW-cWW-cWW

Number of instances in this motif group

30

Unit IDs

6FT6|1|1|G|1623
6FT6|1|1|G|1624
6FT6|1|1|A|1625
*
6FT6|1|1|U|1818
6FT6|1|1|U|1819
6FT6|1|1|U|1820
6FT6|1|1|U|1821
6FT6|1|1|C|1822

Current chains

Chain 1

25S ribosomal RNA

Nearby chains

Chain g

60S ribosomal protein L34-A

Chain k

60S ribosomal protein L38

Chain n

Pescadillo homolog