IL_6FT6_087

3D structure

PDB id

6FT6 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of the Nop53 pre-60S particle bound to the exosome nuclear cofactors

Experimental method

ELECTRON MICROSCOPY

Resolution

3.9 Å

Loop

Sequence

GUCC*GC

Length

6 nucleotides

Bulged bases

6FT6|1|1|U|2771, 6FT6|1|1|C|2772

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_6FT6_087 not in the Motif Atlas

Geometric match to IL_4V88_392

Geometric discrepancy: 0.2474

The information below is about IL_4V88_392

Detailed Annotation

Multiple bulged bases

Broad Annotation

No text annotation

Motif group

IL_82107.1

Basepair signature

cWW-cWW

Number of instances in this motif group

34

Unit IDs

6FT6|1|1|G|2770
6FT6|1|1|U|2771
6FT6|1|1|C|2772
6FT6|1|1|C|2773
*
6FT6|1|1|G|2787
6FT6|1|1|C|2788

Current chains

Chain 1

25S ribosomal RNA

Nearby chains

Chain L

60S ribosomal protein L13-A

Chain a

60S ribosomal protein L28