IL_6FT6_110

3D structure

PDB id

6FT6 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of the Nop53 pre-60S particle bound to the exosome nuclear cofactors

Experimental method

ELECTRON MICROSCOPY

Resolution

3.9 Å

Loop

Sequence

GUA*UUAAGC

Length

9 nucleotides

Bulged bases

6FT6|1|1|G|3377

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_6FT6_110 not in the Motif Atlas

Homologous match to IL_5TBW_132

Geometric discrepancy: 0.1271

The information below is about IL_5TBW_132

Detailed Annotation

Isolated non-canonical cWW pair

Broad Annotation

No text annotation

Motif group

IL_84428.1

Basepair signature

cWW-cWW-L-cWW-L

Number of instances in this motif group

2

Unit IDs

6FT6|1|1|G|3328
6FT6|1|1|U|3329
6FT6|1|1|A|3330
*
6FT6|1|1|U|3373
6FT6|1|1|U|3374
6FT6|1|1|A|3375
6FT6|1|1|A|3376
6FT6|1|1|G|3377
6FT6|1|1|C|3378

Current chains

Chain 1

25S ribosomal RNA

Nearby chains

Chain B

60S ribosomal protein L3

Chain d

60S ribosomal protein L31-A

Chain u

Ribosome biogenesis protein RLP24