3D structure

PDB id
6FTG (explore in PDB, NAKB, or RNA 3D Hub)
Description
Subtomogram average of OST-containing ribosome-translocon complexes from canine rough microsomal membranes
Experimental method
ELECTRON MICROSCOPY
Resolution
9.1 Å

Loop

Sequence
CC*GGG
Length
5 nucleotides
Bulged bases
None detected
QA status
Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.
R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
R3DMCS Rfam
IL_6FTG_042 not in the Motif Atlas
Geometric match to IL_6DLR_003
Geometric discrepancy: 0.3693
The information below is about IL_6DLR_003
Detailed Annotation
Minor groove platform
Broad Annotation
No text annotation
Motif group
IL_51454.3
Basepair signature
cWW-cSH-cWW
Number of instances in this motif group
45

Unit IDs

6FTG|1|u|C|1081
6FTG|1|u|C|1082
*
6FTG|1|u|G|1217
6FTG|1|u|G|1218
6FTG|1|u|G|1219

Current chains

Chain u
28S ribosomal RNA

Nearby chains

No other chains within 10Å

Coloring options:


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