IL_6FTG_056

3D structure

PDB id

6FTG (explore in PDB, NAKB, or RNA 3D Hub)

Description

Subtomogram average of OST-containing ribosome-translocon complexes from canine rough microsomal membranes

Experimental method

ELECTRON MICROSCOPY

Resolution

9.1 Å

Loop

Sequence

CGAAG*UGGAG

Length

10 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_6FTG_056 not in the Motif Atlas

Homologous match to IL_8C3A_033

Geometric discrepancy: 0.1304

The information below is about IL_8C3A_033

Detailed Annotation

Triple sheared

Broad Annotation

No text annotation

Motif group

IL_95716.2

Basepair signature

cWW-cWW-tHS-tHS-tSH-cWW

Number of instances in this motif group

18

Unit IDs

6FTG|1|u|C|1551
6FTG|1|u|G|1552
6FTG|1|u|A|1553
6FTG|1|u|A|1554
6FTG|1|u|G|1555
*
6FTG|1|u|U|1572
6FTG|1|u|G|1573
6FTG|1|u|G|1574
6FTG|1|u|A|1575
6FTG|1|u|G|1576

Current chains

Chain u

28S ribosomal RNA

Nearby chains

Chain A

uL2

Chain R

eL19

Chain p

Ribosomal protein L37a