IL_6FTG_104

3D structure

PDB id

6FTG (explore in PDB, NAKB, or RNA 3D Hub)

Description

Subtomogram average of OST-containing ribosome-translocon complexes from canine rough microsomal membranes

Experimental method

ELECTRON MICROSCOPY

Resolution

9.1 Å

Loop

Sequence

AGUCGG*CUGU

Length

10 nucleotides

Bulged bases

6FTG|1|u|G|3839

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_6FTG_104 not in the Motif Atlas

Homologous match to IL_8C3A_083

Geometric discrepancy: 0.0843

The information below is about IL_8C3A_083

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

IL_06455.1

Basepair signature

cWW-L-R-L-cWW-L-L

Number of instances in this motif group

7

Unit IDs

6FTG|1|u|A|2850
6FTG|1|u|G|2851
6FTG|1|u|U|2852
6FTG|1|u|C|2853
6FTG|1|u|G|2854
6FTG|1|u|G|2855
*
6FTG|1|u|C|3837
6FTG|1|u|U|3838
6FTG|1|u|G|3839
6FTG|1|u|U|3840

Current chains

Chain u

28S ribosomal RNA

Nearby chains

Chain B

uL3

Chain V

uL14