IL_6FTG_105

3D structure

PDB id

6FTG (explore in PDB, NAKB, or RNA 3D Hub)

Description

Subtomogram average of OST-containing ribosome-translocon complexes from canine rough microsomal membranes

Experimental method

ELECTRON MICROSCOPY

Resolution

9.1 Å

Loop

Sequence

CGUAAC*GGAUAAG

Length

13 nucleotides

Bulged bases

6FTG|1|u|U|2880

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_6FTG_105 not in the Motif Atlas

Geometric match to IL_4V9F_063

Geometric discrepancy: 0.0805

The information below is about IL_4V9F_063

Detailed Annotation

tSH-tSH-tHH-tHS

Broad Annotation

No text annotation

Motif group

IL_47346.2

Basepair signature

cWW-tSH-L-R-tHH-tHS-cWW

Number of instances in this motif group

7

Unit IDs

6FTG|1|u|C|2867
6FTG|1|u|G|2868
6FTG|1|u|U|2869
6FTG|1|u|A|2870
6FTG|1|u|A|2871
6FTG|1|u|C|2872
*
6FTG|1|u|G|2877
6FTG|1|u|G|2878
6FTG|1|u|A|2879
6FTG|1|u|U|2880
6FTG|1|u|A|2881
6FTG|1|u|A|2882
6FTG|1|u|G|2883

Current chains

Chain u

28S ribosomal RNA

Nearby chains

Chain n

60s ribosomal protein l41

Chain p

Ribosomal protein L37a