3D structure

PDB id
6FTG (explore in PDB, NAKB, or RNA 3D Hub)
Description
Subtomogram average of OST-containing ribosome-translocon complexes from canine rough microsomal membranes
Experimental method
ELECTRON MICROSCOPY
Resolution
9.1 Å

Loop

Sequence
UG*UAAA
Length
6 nucleotides
Bulged bases
6FTG|1|u|A|3746, 6FTG|1|u|A|3747
QA status
Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.
R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
R3DMCS Rfam
IL_6FTG_112 not in the Motif Atlas
Homologous match to IL_8C3A_090
Geometric discrepancy: 0.1029
The information below is about IL_8C3A_090
Detailed Annotation
Multiple bulged bases
Broad Annotation
No text annotation
Motif group
IL_82107.1
Basepair signature
cWW-cWW
Number of instances in this motif group
34

Unit IDs

6FTG|1|u|U|3704
6FTG|1|u|G|3705
*
6FTG|1|u|U|3745
6FTG|1|u|A|3746
6FTG|1|u|A|3747
6FTG|1|u|A|3748

Current chains

Chain u
28S ribosomal RNA

Nearby chains

Chain A
uL2

Coloring options:


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