3D structure

PDB id
6FTG (explore in PDB, NAKB, or RNA 3D Hub)
Description
Subtomogram average of OST-containing ribosome-translocon complexes from canine rough microsomal membranes
Experimental method
ELECTRON MICROSCOPY
Resolution
9.1 Å

Loop

Sequence
CCAAAUGCCUCG*CGCG
Length
16 nucleotides
Bulged bases
6FTG|1|u|A|3785, 6FTG|1|u|C|3791, 6FTG|1|u|C|3810
QA status
Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.
R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
R3DMCS Rfam
IL_6FTG_118 not in the Motif Atlas
Homologous match to IL_8C3A_095
Geometric discrepancy: 0.1324
The information below is about IL_8C3A_095
Detailed Annotation
No text annotation
Broad Annotation
No text annotation
Motif group
IL_66080.1
Basepair signature
cWW-cWW-tSH-L-cWW-L
Number of instances in this motif group
5

Unit IDs

6FTG|1|u|C|3781
6FTG|1|u|C|3782
6FTG|1|u|A|3783
6FTG|1|u|A|3784
6FTG|1|u|A|3785
6FTG|1|u|U|3786
6FTG|1|u|G|3787
6FTG|1|u|C|3788
6FTG|1|u|C|3789
6FTG|1|u|U|3790
6FTG|1|u|C|3791
6FTG|1|u|G|3792
*
6FTG|1|u|C|3808
6FTG|1|u|G|3809
6FTG|1|u|C|3810
6FTG|1|u|G|3811

Current chains

Chain u
28S ribosomal RNA

Nearby chains

Chain n
60s ribosomal protein l41

Coloring options:


Copyright 2025 BGSU RNA group. Page generated in 0.2202 s