IL_6FTG_119

3D structure

PDB id

6FTG (explore in PDB, NAKB, or RNA 3D Hub)

Description

Subtomogram average of OST-containing ribosome-translocon complexes from canine rough microsomal membranes

Experimental method

ELECTRON MICROSCOPY

Resolution

9.1 Å

Loop

Sequence

GCGG*UAC

Length

7 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_6FTG_119 not in the Motif Atlas

Homologous match to IL_5TBW_091

Geometric discrepancy: 0.0771

The information below is about IL_5TBW_091

Detailed Annotation

Major groove platform with extra pair

Broad Annotation

Major groove platform

Motif group

IL_63450.5

Basepair signature

cWW-cHS-cWW-cWW-cWW

Number of instances in this motif group

7

Unit IDs

6FTG|1|u|G|3895
6FTG|1|u|C|3896
6FTG|1|u|G|3897
6FTG|1|u|G|3898
*
6FTG|1|u|U|4563
6FTG|1|u|A|4564
6FTG|1|u|C|4565

Current chains

Chain u

28S ribosomal RNA

Nearby chains

Chain B

uL3

Chain O

uL13