3D structure

PDB id
6FTG (explore in PDB, NAKB, or RNA 3D Hub)
Description
Subtomogram average of OST-containing ribosome-translocon complexes from canine rough microsomal membranes
Experimental method
ELECTRON MICROSCOPY
Resolution
9.1 Å

Loop

Sequence
GCGG*UAC
Length
7 nucleotides
Bulged bases
None detected
QA status
Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.
R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
R3DMCS Rfam
IL_6FTG_119 not in the Motif Atlas
Homologous match to IL_5TBW_091
Geometric discrepancy: 0.0771
The information below is about IL_5TBW_091
Detailed Annotation
Major groove platform with extra pair
Broad Annotation
Major groove platform
Motif group
IL_63450.5
Basepair signature
cWW-cHS-cWW-cWW-cWW
Number of instances in this motif group
7

Unit IDs

6FTG|1|u|G|3895
6FTG|1|u|C|3896
6FTG|1|u|G|3897
6FTG|1|u|G|3898
*
6FTG|1|u|U|4563
6FTG|1|u|A|4564
6FTG|1|u|C|4565

Current chains

Chain u
28S ribosomal RNA

Nearby chains

Chain B
uL3
Chain O
uL13

Coloring options:


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