3D structure

PDB id
6FTG (explore in PDB, NAKB, or RNA 3D Hub)
Description
Subtomogram average of OST-containing ribosome-translocon complexes from canine rough microsomal membranes
Experimental method
ELECTRON MICROSCOPY
Resolution
9.1 Å

Loop

Sequence
GAGC*GAAC
Length
8 nucleotides
Bulged bases
None detected
QA status
Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.
R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
R3DMCS Rfam
IL_6FTG_154 not in the Motif Atlas
Geometric match to IL_3WBM_002
Geometric discrepancy: 0.2853
The information below is about IL_3WBM_002
Detailed Annotation
Tandem non-canonical cWW pairs
Broad Annotation
No text annotation
Motif group
IL_85033.2
Basepair signature
cWW-cWW-cWW-cWW
Number of instances in this motif group
35

Unit IDs

6FTG|1|u|G|4743
6FTG|1|u|A|4744
6FTG|1|u|G|4745
6FTG|1|u|C|4746
*
6FTG|1|u|G|4954
6FTG|1|u|A|4955
6FTG|1|u|A|4956
6FTG|1|u|C|4957

Current chains

Chain u
28S ribosomal RNA

Nearby chains

Chain f
eL33

Coloring options:


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