3D structure

PDB id
6FTG (explore in PDB, NAKB, or RNA 3D Hub)
Description
Subtomogram average of OST-containing ribosome-translocon complexes from canine rough microsomal membranes
Experimental method
ELECTRON MICROSCOPY
Resolution
9.1 Å

Loop

Sequence
GUUAGUAC*GGAAUAC
Length
15 nucleotides
Bulged bases
None detected
QA status
Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.
R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
R3DMCS Rfam
IL_6FTG_172 not in the Motif Atlas
Homologous match to IL_5TBW_377
Geometric discrepancy: 0.2983
The information below is about IL_5TBW_377
Detailed Annotation
8x7 Sarcin-Ricin; G-bulge
Broad Annotation
Sarcin-Ricin; G-bulge
Motif group
IL_04346.8
Basepair signature
cWW-cWW-tSH-tHH-cSH-tWH-tHS-cWW
Number of instances in this motif group
15

Unit IDs

6FTG|1|v|G|71
6FTG|1|v|U|72
6FTG|1|v|U|73
6FTG|1|v|A|74
6FTG|1|v|G|75
6FTG|1|v|U|76
6FTG|1|v|A|77
6FTG|1|v|C|78
*
6FTG|1|v|G|98
6FTG|1|v|G|99
6FTG|1|v|A|100
6FTG|1|v|A|101
6FTG|1|v|U|102
6FTG|1|v|A|103
6FTG|1|v|C|104

Current chains

Chain v
5S ribosomal RNA

Nearby chains

Chain D
60S ribosomal protein L5
Chain F
uL30
Chain I
Ribosomal protein L10 (Predicted)
Chain S
eL20
Chain T
eL21
Chain u
Large subunit ribosomal RNA; LSU rRNA

Coloring options:


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