IL_6FTG_172
3D structure
- PDB id
- 6FTG (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Subtomogram average of OST-containing ribosome-translocon complexes from canine rough microsomal membranes
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 9.1 Å
Loop
- Sequence
- GUUAGUAC*GGAAUAC
- Length
- 15 nucleotides
- Bulged bases
- None detected
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- IL_6FTG_172 not in the Motif Atlas
- Homologous match to IL_5TBW_377
- Geometric discrepancy: 0.2983
- The information below is about IL_5TBW_377
- Detailed Annotation
- 8x7 Sarcin-Ricin; G-bulge
- Broad Annotation
- Sarcin-Ricin; G-bulge
- Motif group
- IL_04346.8
- Basepair signature
- cWW-cWW-tSH-tHH-cSH-tWH-tHS-cWW
- Number of instances in this motif group
- 15
Unit IDs
6FTG|1|v|G|71
6FTG|1|v|U|72
6FTG|1|v|U|73
6FTG|1|v|A|74
6FTG|1|v|G|75
6FTG|1|v|U|76
6FTG|1|v|A|77
6FTG|1|v|C|78
*
6FTG|1|v|G|98
6FTG|1|v|G|99
6FTG|1|v|A|100
6FTG|1|v|A|101
6FTG|1|v|U|102
6FTG|1|v|A|103
6FTG|1|v|C|104
Current chains
- Chain v
- 5S ribosomal RNA
Nearby chains
- Chain D
- 60S ribosomal protein L5
- Chain F
- uL30
- Chain I
- Ribosomal protein L10 (Predicted)
- Chain S
- eL20
- Chain T
- eL21
- Chain u
- Large subunit ribosomal RNA; LSU rRNA
Coloring options: