IL_6FTG_188

3D structure

PDB id

6FTG (explore in PDB, NAKB, or RNA 3D Hub)

Description

Subtomogram average of OST-containing ribosome-translocon complexes from canine rough microsomal membranes

Experimental method

ELECTRON MICROSCOPY

Resolution

9.1 Å

Loop

Sequence

GUCC*GUC

Length

7 nucleotides

Bulged bases

6FTG|1|u|C|4771

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_6FTG_188 not in the Motif Atlas

Geometric match to IL_8VTW_096

Geometric discrepancy: 0.2246

The information below is about IL_8VTW_096

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

IL_54650.3

Basepair signature

cWW-cWW-cWW

Number of instances in this motif group

16

Unit IDs

6FTG|1|u|G|4769
6FTG|1|u|U|4770
6FTG|1|u|C|4771
6FTG|1|u|C|4772
*
6FTG|1|u|G|4863
6FTG|1|u|U|4864
6FTG|1|u|C|4865

Current chains

Chain u

28S ribosomal RNA

Nearby chains

Chain H

uL6

Chain O

uL13