IL_6FTI_013
3D structure
- PDB id
- 6FTI (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Cryo-EM Structure of the Mammalian Oligosaccharyltransferase Bound to Sec61 and the Programmed 80S Ribosome
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 4.2 Å
Loop
- Sequence
- UCGUGG*CG
- Length
- 8 nucleotides
- Bulged bases
- 6FTI|1|u|C|185, 6FTI|1|u|G|186, 6FTI|1|u|U|187, 6FTI|1|u|G|188
- QA status
- Unknown status
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- IL_6FTI_013 not in the Motif Atlas
- Geometric match to IL_1NBS_009
- Geometric discrepancy: 0.2385
- The information below is about IL_1NBS_009
- Detailed Annotation
- Major groove intercalation
- Broad Annotation
- Major groove intercalation
- Motif group
- IL_71421.2
- Basepair signature
- cWW-cWW
- Number of instances in this motif group
- 35
Unit IDs
6FTI|1|u|U|184
6FTI|1|u|C|185
6FTI|1|u|G|186
6FTI|1|u|U|187
6FTI|1|u|G|188
6FTI|1|u|G|189
*
6FTI|1|u|C|252
6FTI|1|u|G|253
Current chains
- Chain u
- 28S rRNA
Nearby chains
- Chain C
- Ribosomal protein L4
- Chain L
- eL13
- Chain Y
- Ribosomal protein L26
- Chain j
- Ribosomal protein L37
- Chain w
- 5.8S ribosomal RNA; 5.8S rRNA
Coloring options: