IL_6FTI_055
3D structure
- PDB id
- 6FTI (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Cryo-EM Structure of the Mammalian Oligosaccharyltransferase Bound to Sec61 and the Programmed 80S Ribosome
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 4.2 Å
Loop
- Sequence
- GAAAG*CUAGUAGC
- Length
- 13 nucleotides
- Bulged bases
- 6FTI|1|u|A|1650, 6FTI|1|u|G|1654
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- IL_6FTI_055 not in the Motif Atlas
- Homologous match to IL_5TBW_028
- Geometric discrepancy: 0.0692
- The information below is about IL_5TBW_028
- Detailed Annotation
- tHW-tHW cross-strand stack
- Broad Annotation
- No text annotation
- Motif group
- IL_17470.7
- Basepair signature
- cWW-tWW-L-R-tWH-L-cWW
- Number of instances in this motif group
- 7
Unit IDs
6FTI|1|u|G|1522
6FTI|1|u|A|1523
6FTI|1|u|A|1524
6FTI|1|u|A|1525
6FTI|1|u|G|1526
*
6FTI|1|u|C|1648
6FTI|1|u|U|1649
6FTI|1|u|A|1650
6FTI|1|u|G|1651
6FTI|1|u|U|1652
6FTI|1|u|A|1653
6FTI|1|u|G|1654
6FTI|1|u|C|1655
Current chains
- Chain u
- 28S rRNA
Nearby chains
- Chain C
- Ribosomal protein L4
- Chain L
- eL13
- Chain N
- Ribosomal protein L15
- Chain a
- uL15
- Chain j
- Ribosomal protein L37
Coloring options: