IL_6FTI_060
3D structure
- PDB id
- 6FTI (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Cryo-EM Structure of the Mammalian Oligosaccharyltransferase Bound to Sec61 and the Programmed 80S Ribosome
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 4.2 Å
Loop
- Sequence
- GGG*UAAUC
- Length
- 8 nucleotides
- Bulged bases
- 6FTI|1|u|G|1625, 6FTI|1|u|A|1637, 6FTI|1|u|A|1638, 6FTI|1|u|U|1639
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- IL_6FTI_060 not in the Motif Atlas
- Geometric match to IL_5TBW_033
- Geometric discrepancy: 0.074
- The information below is about IL_5TBW_033
- Detailed Annotation
- Multiple bulged bases
- Broad Annotation
- No text annotation
- Motif group
- IL_90991.8
- Basepair signature
- cWW-cWW
- Number of instances in this motif group
- 6
Unit IDs
6FTI|1|u|G|1624
6FTI|1|u|G|1625
6FTI|1|u|G|1626
*
6FTI|1|u|U|1636
6FTI|1|u|A|1637
6FTI|1|u|A|1638
6FTI|1|u|U|1639
6FTI|1|u|C|1640
Current chains
- Chain u
- 28S rRNA
Nearby chains
- Chain A
- uL2
- Chain N
- Ribosomal protein L15
- Chain P
- uL22
- Chain j
- Ribosomal protein L37
Coloring options: