IL_6FTI_089
3D structure
- PDB id
- 6FTI (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Cryo-EM Structure of the Mammalian Oligosaccharyltransferase Bound to Sec61 and the Programmed 80S Ribosome
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 4.2 Å
Loop
- Sequence
- GUAGUAG*CGAAAC
- Length
- 13 nucleotides
- Bulged bases
- None detected
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- IL_6FTI_089 not in the Motif Atlas
- Homologous match to IL_5TBW_061
- Geometric discrepancy: 0.0909
- The information below is about IL_5TBW_061
- Detailed Annotation
- 7x6 Sarcin-Ricin; G-bulge
- Broad Annotation
- Sarcin-Ricin; G-bulge
- Motif group
- IL_76042.3
- Basepair signature
- cWW-tSH-tHH-cSH-tWH-tHS-cWW
- Number of instances in this motif group
- 9
Unit IDs
6FTI|1|u|G|2358
6FTI|1|u|U|2359
6FTI|1|u|A|2360
6FTI|1|u|G|2361
6FTI|1|u|U|2362
6FTI|1|u|A|2363
6FTI|1|u|G|2364
*
6FTI|1|u|C|3858
6FTI|1|u|G|3859
6FTI|1|u|A|3860
6FTI|1|u|A|3861
6FTI|1|u|A|3862
6FTI|1|u|C|3863
Current chains
- Chain u
- 28S rRNA
Nearby chains
- Chain C
- Ribosomal protein L4
- Chain P
- uL22
Coloring options: