IL_6FTI_094

3D structure

PDB id

6FTI (explore in PDB, NAKB, or RNA 3D Hub)

Description

Cryo-EM Structure of the Mammalian Oligosaccharyltransferase Bound to Sec61 and the Programmed 80S Ribosome

Experimental method

ELECTRON MICROSCOPY

Resolution

4.2 Å

Loop

Sequence

CGAUC*GGGAG

Length

10 nucleotides

Bulged bases

None detected

QA status

Unknown status

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_6FTI_094 not in the Motif Atlas

Homologous match to IL_8C3A_073

Geometric discrepancy: 0.2577

The information below is about IL_8C3A_073

Detailed Annotation

Triple sheared

Broad Annotation

No text annotation

Motif group

IL_95716.2

Basepair signature

cWW-cWW-tHS-tHS-tSH-cWW

Number of instances in this motif group

18

Unit IDs

6FTI|1|u|C|2589
6FTI|1|u|G|2590
6FTI|1|u|A|2591
6FTI|1|u|U|2592
6FTI|1|u|C|2593
*
6FTI|1|u|G|2752
6FTI|1|u|G|2753
6FTI|1|u|G|2754
6FTI|1|u|A|2755
6FTI|1|u|G|2756

Current chains

Chain u

28S rRNA

Nearby chains

Chain A

uL2

Chain Z

60S ribosomal protein L27

Chain g

eL34