IL_6FTI_146

3D structure

PDB id

6FTI (explore in PDB, NAKB, or RNA 3D Hub)

Description

Cryo-EM Structure of the Mammalian Oligosaccharyltransferase Bound to Sec61 and the Programmed 80S Ribosome

Experimental method

ELECTRON MICROSCOPY

Resolution

4.2 Å

Loop

Sequence

CCAU*AGGCG

Length

9 nucleotides

Bulged bases

6FTI|1|u|C|4720

QA status

Unknown status

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_6FTI_146 not in the Motif Atlas

Homologous match to IL_8C3A_123

Geometric discrepancy: 0.1428

The information below is about IL_8C3A_123

Detailed Annotation

Double sheared

Broad Annotation

Double sheared

Motif group

IL_09705.12

Basepair signature

cWW-tSH-tHS-cWW

Number of instances in this motif group

35

Unit IDs

6FTI|1|u|C|4582
6FTI|1|u|C|4583
6FTI|1|u|A|4584
6FTI|1|u|U|4585
*
6FTI|1|u|A|4717
6FTI|1|u|G|4718
6FTI|1|u|G|4719
6FTI|1|u|C|4720
6FTI|1|u|G|4721

Current chains

Chain u

28S rRNA

Nearby chains

Chain B

uL3

Chain O

uL13