IL_6FTI_148
3D structure
- PDB id
- 6FTI (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Cryo-EM Structure of the Mammalian Oligosaccharyltransferase Bound to Sec61 and the Programmed 80S Ribosome
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 4.2 Å
Loop
- Sequence
- CUCAGUAC*GGAACCG
- Length
- 15 nucleotides
- Bulged bases
- None detected
- QA status
- Unknown status
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- IL_6FTI_148 not in the Motif Atlas
- Homologous match to IL_8C3A_125
- Geometric discrepancy: 0.0823
- The information below is about IL_8C3A_125
- Detailed Annotation
- 8x7 Sarcin-Ricin; G-bulge
- Broad Annotation
- Sarcin-Ricin; G-bulge
- Motif group
- IL_04346.8
- Basepair signature
- cWW-cWW-tSH-tHH-cSH-tWH-tHS-cWW
- Number of instances in this motif group
- 15
Unit IDs
6FTI|1|u|C|4596
6FTI|1|u|U|4597
6FTI|1|u|C|4598
6FTI|1|u|A|4599
6FTI|1|u|G|4600
6FTI|1|u|U|4601
6FTI|1|u|A|4602
6FTI|1|u|C|4603
*
6FTI|1|u|G|4608
6FTI|1|u|G|4609
6FTI|1|u|A|4610
6FTI|1|u|A|4611
6FTI|1|u|C|4612
6FTI|1|u|C|4613
6FTI|1|u|G|4614
Current chains
- Chain u
- 28S rRNA
Nearby chains
- Chain B
- uL3
- Chain H
- uL6
- Chain V
- uL14
- Chain m
- eL40
Coloring options: